Gene

Acoerulea Aquca 036 00065

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Acoerulea_Aquca_036_00065
Aquca_036_00065
scaffold_36 1005758 1010794 Phytozome [[Species:|]]"Species:" cannot be used as a page name in this wiki.
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Acoerulea_Aquca_036_00065.1
Aquca_036_00065.1
PAC:22055261
Low No 760
Coding potential...
Type: noncoding Potential: -0.145
Folding energies...
MFEI: -23.605 AMFE: -0.621
GC content
%: 38.026
Acoerulea_Aquca_036_00065.3
Aquca_036_00065.3
PAC:22055263
Low No 705
Coding potential...
Type: noncoding Potential: -0.144
Folding energies...
MFEI: -22.340 AMFE: -0.594
GC content
%: 37.589
Acoerulea_Aquca_036_00065.5
Aquca_036_00065.5
PAC:22055265
Low No 643
Coding potential...
Type: noncoding Potential: -0.089
Folding energies...
MFEI: -22.877 AMFE: -0.596
GC content
%: 38.414


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Acoerulea_Aquca_036_00065.5  SwissProt 2015-06-01 Q93ZJ3 2.0e-10
Acoerulea_Aquca_036_00065.1  SwissProt 2015-06-01 Q93ZJ3 3.0e-10
Acoerulea_Aquca_036_00065.3  SwissProt 2015-06-01 Q93ZJ3 3.0e-10


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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