GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_036_00116 Aquca_036_00116	scaffold_36	1816016	1822058	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_036_00116.1 Aquca_036_00116.1 PAC:22055212	High	No	784		Get ORF Coding potential... Type: noncoding Potential: -0.417 Folding energies... MFEI: -25.855 AMFE: -0.656 GC content %: 39.413
Acoerulea_Aquca_036_00116.2 Aquca_036_00116.2 PAC:22055213	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -0.423 Folding energies... MFEI: -20.352 AMFE: -0.659 GC content %: 30.872

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).