Gene

Acoerulea Aquca 037 00105

From GreeNC

Revision as of 09:26, 22 September 2015 by Apaytuvi (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Acoerulea_Aquca_037_00105
Aquca_037_00105
scaffold_37 923869 924087 Phytozome [[Species:|]]"Species:" cannot be used as a page name in this wiki.
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Acoerulea_Aquca_037_00105.1
Aquca_037_00105.1
PAC:22040370
High No 219
Coding potential...
Type: noncoding Potential: -0.647
Folding energies...
MFEI: -19.726 AMFE: -0.665
GC content
%: 29.680


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Aquca_037_00105.png