GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_037_00116 Aquca_037_00116	scaffold_37	998860	999887	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_037_00116.1 Aquca_037_00116.1 PAC:22040313	High	No	458		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -25.524 AMFE: -0.642 GC content %: 39.738
Acoerulea_Aquca_037_00116.2 Aquca_037_00116.2 PAC:22040312	High	No	315		Get ORF Coding potential... Type: noncoding Potential: -0.806 Folding energies... MFEI: -20.921 AMFE: -0.545 GC content %: 38.413

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).