Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Acoerulea_Aquca_038_00138 Aquca_038_00138 |
scaffold_38 | 1555701 | 1558056 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Acoerulea_Aquca_038_00138.1 Aquca_038_00138.1 PAC:22026807 |
High | No | 597 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -23.199 AMFE: -0.627 GC content %: 37.018 | |
Acoerulea_Aquca_038_00138.2 Aquca_038_00138.2 PAC:22026808 |
High | No | 646 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -23.437 AMFE: -0.618 GC content %: 37.926 | |
Acoerulea_Aquca_038_00138.3 Aquca_038_00138.3 PAC:22026809 |
High | No | 1059 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -25.231 AMFE: -0.690 GC content %: 36.544 | |
Acoerulea_Aquca_038_00138.4 Aquca_038_00138.4 PAC:22026810 |
High | No | 729 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -24.870 AMFE: -0.643 GC content %: 38.683 |