Gene

Acoerulea Aquca 038 00205

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Acoerulea_Aquca_038_00205
Aquca_038_00205
scaffold_38 2237919 2239375 Phytozome [[Species:|]]"Species:" cannot be used as a page name in this wiki.
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Acoerulea_Aquca_038_00205.1
Aquca_038_00205.1
PAC:22026852
Low Yes 1457
Coding potential...
Type: noncoding Potential: -1.010
Folding energies...
MFEI: -25.148 AMFE: -0.667
GC content
%: 37.680


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Acoerulea_Aquca_038_00205.1  Rfam 11.0 MIR397 1.1e-15


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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