Gene

BrapaFPsc Brara.E02118

From GreeNC

Revision as of 19:16, 21 September 2015 by Apaytuvi (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

BrapaFPsc_Brara.E02118
Brara.E02118
A05 19378802 19379044 Phytozome [[Species:|]]"Species:" cannot be used as a page name in this wiki.
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

BrapaFPsc_Brara.E02118.1
Brara.E02118.1
PAC:30626194
High No 243
Coding potential...
Type: noncoding Potential: -0.753
Folding energies...
MFEI: -20.864 AMFE: -0.474
GC content
%: 44.033


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Brara.E02118.png