Gene

Lusitatissimum Lus10005775.g

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Lusitatissimum_Lus10005775.g
Lus10005775.g
scaffold1036 192408 192674 Phytozome v1.0 Linum_usitatissimum
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Lusitatissimum_Lus10005775
Lus10005775
PAC:23169845
Low No 267
Coding potential...
Type: noncoding Potential: -0.631
Folding energies...
MFEI: -30.112 AMFE: -0.618
GC content
%: 48.689


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Lusitatissimum_Lus10005775  SwissProt 2015-06-01 Q945B6 6.0e-12


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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