Gene

Mdomestica MDP0000827286

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Mdomestica_MDP0000827286
MDP0000827286
MDC017112.348 22232 22501 Phytozome v1.0 Malus_domestica
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Mdomestica_MDP0000827286
MDP0000827286
PAC:22634201
High No 270
Coding potential...
Type: noncoding Potential: -0.235
Folding energies...
MFEI: -28.852 AMFE: -0.512
GC content
%: 56.296


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

MDP0000827286.png