Gene

Mesculenta Manes.01G000100

From GreeNC

Revision as of 23:53, 25 September 2015 by Apaytuvi (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Mesculenta_Manes.01G000100
Manes.01G000100
Chromosome01 4 803 Phytozome v6.1 Manihot_esculenta
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Mesculenta_Manes.01G000100.1
Manes.01G000100.1
PAC:32359689
High No 800
Coding potential...
Type: noncoding Potential: -1.023
Folding energies...
MFEI: -18.962 AMFE: -0.570
GC content
%: 33.250


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Manes.01G000100.png