Gene

Ppersica Prupe.1G123600

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Ppersica_Prupe.1G123600
Prupe.1G123600
Pp01 9688671 9689718 Phytozome v2.1 Prunus_persica
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Ppersica_Prupe.1G123600.1
Prupe.1G123600.1
PAC:32114063
Low No 1048
Coding potential...
Type: noncoding Potential: -1.020
Folding energies...
MFEI: -34.790 AMFE: -0.874
GC content
%: 39.790


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Ppersica_Prupe.1G123600.1  RepBase (RepeatMasker) 2014-01-31 EnSpm-13_ZM


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Prupe.1G123600.png