Gene

Ptrichocarpa Potri.T033600

From GreeNC

Revision as of 23:49, 26 September 2015 by Apaytuvi (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Ptrichocarpa_Potri.T033600
Potri.T033600
scaffold_35 63876 64171 Phytozome v3.0 Populus_trichocarpa
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Ptrichocarpa_Potri.T033600.1
Potri.T033600.1
PAC:27051316
High No 210
Coding potential...
Type: noncoding Potential: -0.839
Folding energies...
MFEI: -13.176 AMFE: -0.407
GC content
%: 32.381


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Potri.T033600.png