Gene

Smoellendorffii 107379

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Smoellendorffii_107379
107379
scaffold_35 1128218 1128478 Phytozome v1.0 Selaginella_moellendorffii
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Smoellendorffii_107379
107379
PAC:15420062
Low Yes 261
Coding potential...
Type: noncoding Potential: -0.239
Folding energies...
MFEI: -37.663 AMFE: -0.697
GC content
%: 54.023


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Smoellendorffii_107379  SwissProt 2015-06-01 Q7DMA9 1.0e-8


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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