Gene

Vcarteri Vocar.0035s0035

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Vcarteri_Vocar.0035s0035
Vocar.0035s0035
scaffold_35 314166 315198 Phytozome v2.1 Volvox_carteri
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Vcarteri_Vocar.0035s0035.1
Vocar.0035s0035.1
PAC:32896887
Low No 962
Coding potential...
Type: noncoding Potential: -0.109
Folding energies...
MFEI: -31.622 AMFE: -0.657
GC content
%: 48.129


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Vcarteri_Vocar.0035s0035.1  SwissProt 2015-06-01 Q90YI5 4.0e-16


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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