Gene

Vcarteri Vocar.0035s0061

From GreeNC

Revision as of 18:22, 6 April 2016 by Eva (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Vcarteri_Vocar.0035s0061
Vocar.0035s0061
scaffold_35 482025 483268 Phytozome v2.1 Volvox_carteri
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Vcarteri_Vocar.0035s0061.1
Vocar.0035s0061.1
PAC:32896874
High No 863
Coding potential...
Type: noncoding Potential: -0.806
Folding energies...
MFEI: -34.160 AMFE: -0.668
GC content
%: 51.101


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Vocar.0035s0061.png