GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Vcarteri_Vocar.0035s0107 Vocar.0035s0107	scaffold_35	741997	745530	Phytozome	v2.1	Volvox_carteri	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Vcarteri_Vocar.0035s0107.1 Vocar.0035s0107.1 PAC:32896849	Low	Yes	3534		Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -37.351 AMFE: -0.701 GC content %: 53.311

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).