Gene

Zmays GRMZM2G070873

From GreeNC

Revision as of 19:16, 21 September 2015 by Apaytuvi (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Zmays_GRMZM2G070873
GRMZM2G070873
5 94462480 94463161 Phytozome 6a Zea_mays
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Zmays_GRMZM2G070873_T01
GRMZM2G070873_T01
PAC:30985662
Low Yes 682
Coding potential...
Type: noncoding Potential: -0.562
Folding energies...
MFEI: -40.308 AMFE: -0.703
GC content
%: 57.331


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

GRMZM2G070873.png