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Revision as of 14:16, 21 September 2015
A database of plants lncRNAs
Long non-coding RNAs (lncRNAs) are functional non-translated molecules longer than 200 nucleotides with diverse roles, such as chromatin modifications, transcriptional regulation, and conformational changes in proteins. The Green Non-Coding Database (GreeNC) is a database of plant lncRNAs that provide information about sequence, expression levels, genomic context, and ontology of lncRNAs in plants.
Last news
Published on 21 November 2018 by Apaytuvi.
Welcome to the Green Non-Coding (GreeNC) database! GreeNC is the major resource of plant lncRNAs tod… Read more.
Published on 19 September 2016 by Apaytuvi.
A recent minor update has been incorporated. Change-log:
- lncRNAs containing undefined nucle… Read more.
All the news …
Statistics
| Species | Gene number | Transcript number | High confidence | Repetitive elements | miRNA precursors
|
|---|---|---|---|---|---|
| Actinidia chinensis (Ensembl Plants 51) | 960 | 961 | 591 | 146 | 10 |
| Aegilops tauschii (Ensembl Plants 51) | 15463 | 34092 | 18060 | 6749 | 958 |
| Amaranthus hypocondriacus (Phytozome 13) | 2075 | 2083 | 1476 | 103 | 25 |
| Aquilegia coerulea (Phytozome 13) | 4321 | 4868 | 3545 | 447 | 46 |
| Arabidopsis halleri (Ensembl Plants 51) | 2448 | 2508 | 1814 | 251 | 73 |
| Arabidopsis lyrata (Phytozome 13) | 2593 | 2676 | 1831 | 280 | 38 |
| Arabidopsis thaliana (Phytozome 13) | 1772 | 2254 | 1602 | 271 | 14 |
| Arabis alpina (Ensembl Plants 51) | 1857 | 1919 | 1304 | 198 | 22 |
| Beta vulgaris (Phytozome 13) | 4843 | 4980 | 3538 | 574 | 93 |
| Boechera stricta (Phytozome 13) | 1932 | 2019 | 1416 | 192 | 16 |
| Brachypodium stacei (Phytozome 13) | 2986 | 3195 | 2332 | 496 | 104 |
| Brassica napus (Ensembl Plants 51) | 9060 | 9060 | 6554 | 526 | 70 |
| Brassica rapa (Phytozome 13) | 2563 | 2674 | 1889 | 209 | 33 |
| Camelina sativa (Ensembl Plants 51) | 6099 | 6200 | 4072 | 477 | 59 |
| Capsella rubella (Phytozome 13) | 1720 | 1812 | 1294 | 127 | 23 |
| Capsicum annuum (Ensembl Plants 51) | 2124 | 2124 | 1154 | 417 | 6 |
| Chara braunii (Ensembl Plants 51) | 595 | 596 | 269 | 171 | 31 |
| Chenopodium quinoa (Phytozome 13) | 1935 | 1935 | 1279 | 214 | 6 |
| Chondrus crispus (Ensembl Plants 51) | 1465 | 1465 | 1293 | 24 | 31 |
| Chromochloris zofingiensis (Phytozome 13) | 1457 | 1457 | 1186 | 113 | 11 |
| Cicer arietinum (Phytozome 13) | 2004 | 2004 | 1663 | 82 | 7 |
| Cinnamomum kanehirae (Phytozome 13) | 1237 | 1237 | 806 | 74 | 5 |
| Citrullus lanatus (Ensembl Plants 51) | 2471 | 2471 | 2112 | 76 | 22 |
| Coffea canephora (Ensembl Plants 51) | 1861 | 1861 | 1319 | 149 | 16 |
| Corchorus capsularis (Ensembl Plants 51) | 2210 | 2210 | 1680 | 80 | 11 |
| Cucumis melo (Ensembl Plants 51) | 5001 | 5001 | 3921 | 414 | 19 |
| Cucumis sativus (Ensembl Plants 51) | 3459 | 3459 | 2465 | 118 | 22 |
| Cyanidioschyzon merolae (Ensembl Plants 51) | 141 | 141 | 77 | 7 | 1 |
| Cynara cardunculus (Ensembl Plants 51) | 1756 | 1756 | 1034 | 115 | 14 |
| Dioscorea alata (Phytozome 13) | 1531 | 1728 | 1016 | 244 | 15 |
| Eragrostis curvula (Ensembl Plants 51) | 6042 | 6042 | 4712 | 509 | 30 |
| Eragrostis tef (Ensembl Plants 51) | 2437 | 2437 | 1701 | 97 | 14 |
| Glycine max (Phytozome 13) | 5137 | 5978 | 4246 | 625 | 76 |
| Gossypium barbadense (Phytozome 13) | 7619 | 8720 | 6146 | 731 | 72 |
| Gossypium darwinii (Phytozome 13) | 8569 | 9299 | 6811 | 639 | 60 |
| Gossypium hirsutum (Phytozome 13) | 8006 | 9222 | 6461 | 787 | 81 |
| Gossypium mustelinum (Phytozome 13) | 7953 | 9233 | 6467 | 793 | 77 |
| Gossypium raimondii (Ensembl Plants 51) | 3800 | 4555 | 3000 | 461 | 53 |
| Gossypium tomentosum (Phytozome 13) | 9009 | 10090 | 7504 | 681 | 77 |
| Helianthus annuus (Phytozome 13) | 8197 | 8197 | 5580 | 795 | 67 |
| Hordeum vulgare (Phytozome 13) | 12659 | 23867 | 11477 | 5740 | 872 |
| Juglans regia (Ensembl Plants 51) | 662 | 664 | 404 | 102 | 3 |
| Kalanchoe fedtschenkoi (Phytozome 13) | 3206 | 3568 | 2428 | 368 | 66 |
| Lactuca sativa (Phytozome 13) | 4949 | 5395 | 4095 | 150 | 24 |
| Leersia perrieri (Ensembl Plants 51) | 3353 | 3676 | 2910 | 297 | 37 |
| Lupinus albus (Phytozome 13) | 4869 | 4869 | 3179 | 881 | 54 |
| Lupinus angustifolius (Ensembl Plants 51) | 1684 | 1686 | 1285 | 102 | 6 |
| Manihot esculenta (Phytozome 13) | 2304 | 2655 | 1875 | 316 | 55 |
| Marchantia polymorpha (Phytozome 13) | 2896 | 3196 | 2665 | 260 | 47 |
| Medicago truncatula (Ensembl Plants 51) | 8986 | 9093 | 5288 | 2584 | 102 |
| Musa acuminata (Ensembl Plants 51) | 2091 | 2214 | 1592 | 127 | 16 |
| Nicotiana attenuata (Ensembl Plants 51) | 3851 | 3851 | 2361 | 924 | 40 |
| Nymphaea colorata (Phytozome 13) | 1763 | 2055 | 1356 | 240 | 26 |
| Olea europaea (Phytozome 13) | 5516 | 5516 | 3140 | 508 | 21 |
| Oropetium thomaeum (Phytozome 13) | 4122 | 4122 | 3448 | 54 | 13 |
| Oryza barthii (Ensembl Plants 51) | 5339 | 5600 | 4461 | 588 | 51 |
| Oryza brachyantha (Ensembl Plants 51) | 4575 | 4575 | 3454 | 422 | 43 |
| Oryza glaberrima (Ensembl Plants 51) | 4807 | 4807 | 3334 | 1017 | 29 |
| Oryza glumipatula (Ensembl Plants 51) | 5402 | 5837 | 4536 | 719 | 55 |
| Oryza longistaminata (Ensembl Plants 51) | 3150 | 3150 | 2334 | 74 | 16 |
| Oryza meridionalis (Ensembl Plants 51) | 4389 | 4818 | 3496 | 832 | 67 |
| Oryza nivara (Ensembl Plants 51) | 6077 | 6586 | 4875 | 757 | 64 |
| Oryza punctata (Ensembl Plants 51) | 3850 | 4114 | 3233 | 440 | 39 |
| Oryza rufipogon (Ensembl Plants 51) | 6357 | 6801 | 5006 | 837 | 66 |
| Oryza sativa (Phytozome 13) | 5395 | 5724 | 3788 | 1435 | 104 |
| Panicum hallii (Phytozome 13) | 2331 | 2389 | 2792 | 522 | 37 |
| Panicum virgatum (Phytozome 13) | 9607 | 10438 | 7543 | 1958 | 90 |
| Papaver somniferum (Ensembl Plants 51) | 5025 | 5025 | 3566 | 432 | 50 |
| Pistacia vera (Ensembl Plants 51) | 1360 | 1360 | 952 | 78 | 7 |
| Poncirus trifoliata (Phytozome 13) | 1660 | 1795 | 1233 | 174 | 10 |
| Porphyra umbilicalis (Phytozome 13) | 934 | 938 | 799 | 20 | 3 |
| Prunus avium (Ensembl Plants 51) | 8673 | 8673 | 6035 | 1530 | 85 |
| Prunus dulcis (Ensembl Plants 51) | 4320 | 4381 | 2596 | 1181 | 109 |
| Quercus lobata (Ensembl Plants 51) | 1873 | 1873 | 1011 | 374 | 25 |
| Rosa chinensis (Ensembl Plants 51) | 11326 | 11326 | 6919 | 2478 | 104 |
| Saccharum spontaneum (Ensembl Plants 51) | 7488 | 7488 | 5252 | 823 | 51 |
| Salix purpurea (Phytozome 13) | 3625 | 4070 | 2916 | 396 | 48 |
| Sesamum indicum (Ensembl Plants 51) | 2515 | 2515 | 1783 | 101 | 12 |
| Setaria viridis (Phytozome 13) | 4897 | 5427 | 3948 | 1025 | 62 |
| Solanum lycopersicum (Phytozome 13) | 4242 | 4242 | 2767 | 471 | 29 |
| Solanum tuberosum (Phytozome 13) | 7181 | 8005 | 3302 | 2022 | 46 |
| Sorghum bicolor (Phytozome 13) | 4454 | 5107 | 2973 | 1726 | 77 |
| Trifolium pratense (Phytozome 13) | 5314 | 5402 | 3140 | 830 | 44 |
| Triticum aestivum (Ensembl Plants 51) | 6619 | 6710 | 4833 | 656 | 78 |
| Triticum dicoccoides (Ensembl Plants 51) | 18737 | 38102 | 21006 | 4356 | 316 |
| Triticum spelta (Ensembl Plants 51) | 8829 | 8829 | 6753 | 559 | 37 |
| Triticum turgidum (Ensembl Plants 51) | 5523 | 5870 | 4166 | 346 | 18 |
| Triticum urartu (Ensembl Plants 51) | 4588 | 4588 | 3068 | 281 | 16 |
| Vigna angularis (Ensembl Plants 51) | 3325 | 3325 | 2310 | 172 | 31 |
| Vigna radiata (Ensembl Plants 51) | 1255 | 1268 | 813 | 80 | 21 |
| Vigna unguiculata (Phytozome 13) | 2719 | 3083 | 2270 | 256 | 52 |
| Vitis vinifera (Phytozome 13) | 2711 | 2978 | 2010 | 243 | 16 |
| Zea mays (Ensembl Plants 51) | 5915 | 6301 | 2934 | 1061 | 24 |
| Zea mays (Phytozome 13) | 4385 | 7129 | 4203 | 252 | 65 |