Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv21207700 [ AET2Gv21207700] |
2D | 626330673 | 626332813 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET2Gv21207700.1 AET2Gv21207700.1 |
Low | No | 692 | OG0016115 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -29.335 AMFE: -0.630 GC content %: 46.532 | |
Atauschii_AET2Gv21207700.2 AET2Gv21207700.2 |
High | No | 627 | OG0016115 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -26.188 AMFE: -0.622 GC content %: 42.105 | |
Atauschii_AET2Gv21207700.3 AET2Gv21207700.3 |
Low | No | 505 | OG0016115 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -29.505 AMFE: -0.611 GC content %: 48.317 | |
Atauschii_AET2Gv21207700.9 AET2Gv21207700.9 |
High | No | 580 | OG0071679 | Get ORF Coding potential... Type: noncoding Potential: -0.403 Folding energies... MFEI: -55.172 AMFE: -0.742 GC content %: 74.310 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET2Gv21207700.3 | SwissProt | 2021-04-01 | P0CT30 | 7.49e-5 |
Atauschii_AET2Gv21207700.1 | SwissProt | 2021-04-01 | P0CT30 | 8.61e-5 |