Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20667200 [ AET3Gv20667200] |
3D | 393853577 | 393855743 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20667200.1 AET3Gv20667200.1 |
High | No | 747 | OG0001561 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -38.072 AMFE: -0.692 GC content %: 55.020 | |
Atauschii_AET3Gv20667200.2 AET3Gv20667200.2 |
High | No | 463 | OG0073068 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -21.555 AMFE: -0.542 GC content %: 39.741 | |
Atauschii_AET3Gv20667200.3 AET3Gv20667200.3 |
Low | No | 772 | OG0073069 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -38.044 AMFE: -0.688 GC content %: 55.311 | |
Atauschii_AET3Gv20667200.4 AET3Gv20667200.4 |
Low | No | 304 | OG0001561 | Get ORF Coding potential... Type: noncoding Potential: -0.729 Folding energies... MFEI: -51.612 AMFE: -0.730 GC content %: 70.724 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv20667200.3 | SwissProt | 2021-04-01 | Q93ZJ3 | 1.0e-3 |
Atauschii_AET3Gv20667200.4 | SwissProt | 2021-04-01 | Q93ZJ3 | 3.22e-4 |