Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G055320 [ HORVU1Hr1G055320] |
chr1H | 405305563 | 405312023 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G055320.1 HORVU1Hr1G055320.1 |
Low | No | 1829 | OG0003234 | Get ORF Coding potential... Type: noncoding Potential: -0.671 Folding energies... MFEI: -38.464 AMFE: -0.714 GC content %: 53.855 | |
Hvulgare_HORVU1Hr1G055320.11 HORVU1Hr1G055320.11 |
High | No | 1624 | OG0003234 | Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -38.688 AMFE: -0.690 GC content %: 56.096 | |
Hvulgare_HORVU1Hr1G055320.12 HORVU1Hr1G055320.12 |
High | No | 1655 | OG0003234 | Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -36.876 AMFE: -0.679 GC content %: 54.320 | |
Hvulgare_HORVU1Hr1G055320.13 HORVU1Hr1G055320.13 |
High | No | 3687 | OG0005711 | Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -31.199 AMFE: -0.690 GC content %: 45.213 | |
Hvulgare_HORVU1Hr1G055320.15 HORVU1Hr1G055320.15 |
High | No | 1493 | OG0036641 | Get ORF Coding potential... Type: noncoding Potential: -0.741 Folding energies... MFEI: -39.089 AMFE: -0.698 GC content %: 55.995 | |
Hvulgare_HORVU1Hr1G055320.16 HORVU1Hr1G055320.16 |
High | No | 3400 | OG0036642 | Get ORF Coding potential... Type: noncoding Potential: -0.640 Folding energies... MFEI: -30.968 AMFE: -0.688 GC content %: 45.029 | |
Hvulgare_HORVU1Hr1G055320.17 HORVU1Hr1G055320.17 |
High | No | 1232 | OG0036643 | Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -39.326 AMFE: -0.669 GC content %: 58.766 | |
Hvulgare_HORVU1Hr1G055320.2 HORVU1Hr1G055320.2 |
High | No | 1858 | OG0003234 | Get ORF Coding potential... Type: noncoding Potential: -0.673 Folding energies... MFEI: -38.068 AMFE: -0.705 GC content %: 53.983 | |
Hvulgare_HORVU1Hr1G055320.5 HORVU1Hr1G055320.5 |
High | No | 3354 | OG0036644 | Get ORF Coding potential... Type: noncoding Potential: -0.639 Folding energies... MFEI: -31.601 AMFE: -0.692 GC content %: 45.677 | |
Hvulgare_HORVU1Hr1G055320.6 HORVU1Hr1G055320.6 |
High | No | 3703 | OG0005711 | Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -31.672 AMFE: -0.693 GC content %: 45.693 | |
Hvulgare_HORVU1Hr1G055320.7 HORVU1Hr1G055320.7 |
High | No | 3715 | OG0005711 | Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -31.965 AMFE: -0.699 GC content %: 45.707 | |
Hvulgare_HORVU1Hr1G055320.9 HORVU1Hr1G055320.9 |
Low | No | 1725 | OG0036645 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -24.754 AMFE: -0.674 GC content %: 36.754 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU1Hr1G055320.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Hvulgare_HORVU1Hr1G055320.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |