Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU3Hr1G053090 [ HORVU3Hr1G053090] |
chr3H | 389506574 | 389541115 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU3Hr1G053090.2 HORVU3Hr1G053090.2 |
High | No | 377 | OG0012585 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -31.857 AMFE: -0.553 GC content %: 57.560 | |
Hvulgare_HORVU3Hr1G053090.3 HORVU3Hr1G053090.3 |
High | No | 706 | OG0012585 | Get ORF Coding potential... Type: noncoding Potential: -1.041 Folding energies... MFEI: -29.660 AMFE: -0.625 GC content %: 47.450 | |
Hvulgare_HORVU3Hr1G053090.6 HORVU3Hr1G053090.6 |
High | No | 436 | OG0041171 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -30.803 AMFE: -0.586 GC content %: 52.523 | |
Hvulgare_HORVU3Hr1G053090.7 HORVU3Hr1G053090.7 |
High | No | 336 | OG0041172 | Get ORF Coding potential... Type: noncoding Potential: -1.319 Folding energies... MFEI: -26.101 AMFE: -0.626 GC content %: 41.667 |