GreeNC

A database of plants lncRNAs

Amborella trichopoda

Aquilegia coerulea

Arabidopsis halleri

Arabidopsis lyrata

Arabidopsis thaliana

Boechera stricta

Brachypodium distachyon

Brassica rapa

Capsella grandiflora

Capsella rubella

Carica papaya

Chlamydomonas reinhardtii

Citrus clementina

Citrus sinensis

Coccomyxa subellipsoidea C-169

Cucumis sativus

Eucalyptus grandis

Eutrema salsugineum

Fragaria vesca

Glycine max

Gossypium raimondii

Kalanchoe laxiflora

Linum usitatissimum

Malus domestica

Manihot esculenta

Medicago truncatula

Micromonas pusilla CCMP1545

Micromonas pusilla RCC299

Mimulus guttatus

Musa acuminata

Oryza sativa Japonica Group

Ostreococcus lucimarinus

Panicum hallii

Panicum virgatum

Phaseolus vulgaris

Physcomitrella patens

Populus trichocarpa

Prunus persica

Ricinus communis

Salix purpurea

Selaginella moellendorffii

Setaria italica

Solanum lycopersicum

Solanum tuberosum

Sorghum bicolor

Spirodela polyrhiza

Theobroma cacao

Triticum aestivum

Vitis vinifera

Volvox carteri

Zea mays

Long non-coding RNAs (lncRNAs) are functional non-translated molecules longer than 200 nucleotides with diverse roles, such as chromatin modifications, transcriptional regulation, and conformational changes in proteins. The Green Non-Coding Database (GreeNC) is a database of plant lncRNAs that provide information about sequence, expression levels, genomic context, and ontology of lncRNAs in plants.

---

Last news

Welcome to GreeNC!

Published on 21 November 2018 by Apaytuvi.

Welcome to the Green Non-Coding (GreeNC) database! GreeNC is the major resource of plant lncRNAs tod… Read more.

Tags: GreeNC

Minor update 1.12

Published on 19 September 2016 by Apaytuvi.

A recent minor update has been incorporated. Change-log:

• lncRNAs containing undefined nucle… Read more.

Tags: GreeNC, Minorupdate, Update

All the news …

Statistics

Species	Gene number	Transcript number	High confidence	Repetitive elements	miRNA precursors
Actinidia chinensis (Ensembl Plants 51)	960	961	591	146	10
Aegilops tauschii (Ensembl Plants 51)	15463	34092	18060	6749	958
Amaranthus hypocondriacus (Phytozome 13)	2075	2083	1476	103	25
Aquilegia coerulea (Phytozome 13)	4321	4868	3545	447	46
Arabidopsis halleri (Ensembl Plants 51)	2448	2508	1814	251	73
Arabidopsis lyrata (Phytozome 13)	2593	2676	1831	280	38
Arabidopsis thaliana (Phytozome 13)	1772	2254	1602	271	14
Arabis alpina (Ensembl Plants 51)	1857	1919	1304	198	22
Beta vulgaris (Phytozome 13)	4843	4980	3538	574	93
Boechera stricta (Phytozome 13)	1932	2019	1416	192	16
Brachypodium stacei (Phytozome 13)	2986	3195	2332	496	104
Brassica napus (Ensembl Plants 51)	9060	9060	6554	526	70
Brassica rapa (Phytozome 13)	2563	2674	1889	209	33
Camelina sativa (Ensembl Plants 51)	6099	6200	4072	477	59
Capsella rubella (Phytozome 13)	1720	1812	1294	127	23
Capsicum annuum (Ensembl Plants 51)	2124	2124	1154	417	6
Chara braunii (Ensembl Plants 51)	595	596	269	171	31
Chenopodium quinoa (Phytozome 13)	1935	1935	1279	214	6
Chondrus crispus (Ensembl Plants 51)	1465	1465	1293	24	31
Chromochloris zofingiensis (Phytozome 13)	1457	1457	1186	113	11
Cicer arietinum (Phytozome 13)	2004	2004	1663	82	7
Cinnamomum kanehirae (Phytozome 13)	1237	1237	806	74	5
Citrullus lanatus (Ensembl Plants 51)	2471	2471	2112	76	22
Coffea canephora (Ensembl Plants 51)	1861	1861	1319	149	16
Corchorus capsularis (Ensembl Plants 51)	2210	2210	1680	80	11
Cucumis melo (Ensembl Plants 51)	5001	5001	3921	414	19
Cucumis sativus (Ensembl Plants 51)	3459	3459	2465	118	22
Cyanidioschyzon merolae (Ensembl Plants 51)	141	141	77	7	1
Cynara cardunculus (Ensembl Plants 51)	1756	1756	1034	115	14
Dioscorea alata (Phytozome 13)	1531	1728	1016	244	15
Eragrostis curvula (Ensembl Plants 51)	6042	6042	4712	509	30
Eragrostis tef (Ensembl Plants 51)	2437	2437	1701	97	14
Glycine max (Phytozome 13)	5137	5978	4246	625	76
Gossypium barbadense (Phytozome 13)	7619	8720	6146	731	72
Gossypium darwinii (Phytozome 13)	8569	9299	6811	639	60
Gossypium hirsutum (Phytozome 13)	8006	9222	6461	787	81
Gossypium mustelinum (Phytozome 13)	7953	9233	6467	793	77
Gossypium raimondii (Ensembl Plants 51)	3800	4555	3000	461	53
Gossypium tomentosum (Phytozome 13)	9009	10090	7504	681	77
Helianthus annuus (Phytozome 13)	8197	8197	5580	795	67
Hordeum vulgare (Phytozome 13)	12659	23867	11477	5740	872
Juglans regia (Ensembl Plants 51)	662	664	404	102	3
Kalanchoe fedtschenkoi (Phytozome 13)	3206	3568	2428	368	66
Lactuca sativa (Phytozome 13)	4949	5395	4095	150	24
Leersia perrieri (Ensembl Plants 51)	3353	3676	2910	297	37
Lupinus albus (Phytozome 13)	4869	4869	3179	881	54
Lupinus angustifolius (Ensembl Plants 51)	1684	1686	1285	102	6
Manihot esculenta (Phytozome 13)	2304	2655	1875	316	55
Marchantia polymorpha (Phytozome 13)	2896	3196	2665	260	47
Medicago truncatula (Ensembl Plants 51)	8986	9093	5288	2584	102
Musa acuminata (Ensembl Plants 51)	2091	2214	1592	127	16
Nicotiana attenuata (Ensembl Plants 51)	3851	3851	2361	924	40
Nymphaea colorata (Phytozome 13)	1763	2055	1356	240	26
Olea europaea (Phytozome 13)	5516	5516	3140	508	21
Oropetium thomaeum (Phytozome 13)	4122	4122	3448	54	13
Oryza barthii (Ensembl Plants 51)	5339	5600	4461	588	51
Oryza brachyantha (Ensembl Plants 51)	4575	4575	3454	422	43
Oryza glaberrima (Ensembl Plants 51)	4807	4807	3334	1017	29
Oryza glumipatula (Ensembl Plants 51)	5402	5837	4536	719	55
Oryza longistaminata (Ensembl Plants 51)	3150	3150	2334	74	16
Oryza meridionalis (Ensembl Plants 51)	4389	4818	3496	832	67
Oryza nivara (Ensembl Plants 51)	6077	6586	4875	757	64
Oryza punctata (Ensembl Plants 51)	3850	4114	3233	440	39
Oryza rufipogon (Ensembl Plants 51)	6357	6801	5006	837	66
Oryza sativa (Phytozome 13)	5395	5724	3788	1435	104
Panicum hallii (Phytozome 13)	2331	2389	2792	522	37
Panicum virgatum (Phytozome 13)	9607	10438	7543	1958	90
Papaver somniferum (Ensembl Plants 51)	5025	5025	3566	432	50
Pistacia vera (Ensembl Plants 51)	1360	1360	952	78	7
Poncirus trifoliata (Phytozome 13)	1660	1795	1233	174	10
Porphyra umbilicalis (Phytozome 13)	934	938	799	20	3
Prunus avium (Ensembl Plants 51)	8673	8673	6035	1530	85
Prunus dulcis (Ensembl Plants 51)	4320	4381	2596	1181	109
Quercus lobata (Ensembl Plants 51)	1873	1873	1011	374	25
Rosa chinensis (Ensembl Plants 51)	11326	11326	6919	2478	104
Saccharum spontaneum (Ensembl Plants 51)	7488	7488	5252	823	51
Salix purpurea (Phytozome 13)	3625	4070	2916	396	48
Sesamum indicum (Ensembl Plants 51)	2515	2515	1783	101	12
Setaria viridis (Phytozome 13)	4897	5427	3948	1025	62
Solanum lycopersicum (Phytozome 13)	4242	4242	2767	471	29
Solanum tuberosum (Phytozome 13)	7181	8005	3302	2022	46
Sorghum bicolor (Phytozome 13)	4454	5107	2973	1726	77
Trifolium pratense (Phytozome 13)	5314	5402	3140	830	44
Triticum aestivum (Ensembl Plants 51)	6619	6710	4833	656	78
Triticum dicoccoides (Ensembl Plants 51)	18737	38102	21006	4356	316
Triticum spelta (Ensembl Plants 51)	8829	8829	6753	559	37
Triticum turgidum (Ensembl Plants 51)	5523	5870	4166	346	18
Triticum urartu (Ensembl Plants 51)	4588	4588	3068	281	16
Vigna angularis (Ensembl Plants 51)	3325	3325	2310	172	31
Vigna radiata (Ensembl Plants 51)	1255	1268	813	80	21
Vigna unguiculata (Phytozome 13)	2719	3083	2270	256	52
Vitis vinifera (Phytozome 13)	2711	2978	2010	243	16
Zea mays (Ensembl Plants 51)	5915	6301	2934	1061	24
Zea mays (Phytozome 13)	4385	7129	4203	252	65