Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20677200 [ AET5Gv20677200] |
5D | 402827424 | 403033567 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20677200.16 AET5Gv20677200.16 |
High | No | 572 | OG0077007 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -27.010 AMFE: -0.638 GC content %: 42.308 | |
Atauschii_AET5Gv20677200.21 AET5Gv20677200.21 |
Low | No | 355 | OG0077008 | Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -25.239 AMFE: -0.593 GC content %: 42.535 | |
Atauschii_AET5Gv20677200.22 AET5Gv20677200.22 |
High | No | 243 | OG0009836 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -25.350 AMFE: -0.570 GC content %: 44.444 | |
Atauschii_AET5Gv20677200.5 AET5Gv20677200.5 |
High | No | 204 | OG0077009 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -21.863 AMFE: -0.519 GC content %: 42.157 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET5Gv20677200.21 | SwissProt | 2021-04-01 | Q8BV79 | 1.88e-7 |