Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU4Hr1G053830 [ HORVU4Hr1G053830] |
chr4H | 448576443 | 448579088 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU4Hr1G053830.10 HORVU4Hr1G053830.10 |
Low | No | 311 | OG0043505 | Get ORF Coding potential... Type: noncoding Potential: -0.212 Folding energies... MFEI: -32.765 AMFE: -0.649 GC content %: 50.482 | |
Hvulgare_HORVU4Hr1G053830.3 HORVU4Hr1G053830.3 |
Low | No | 1413 | OG0043506 | Get ORF Coding potential... Type: noncoding Potential: -0.061 Folding energies... MFEI: -28.478 AMFE: -0.634 GC content %: 44.940 | |
Hvulgare_HORVU4Hr1G053830.6 HORVU4Hr1G053830.6 |
Low | No | 2645 | OG0043507 | Get ORF Coding potential... Type: noncoding Potential: -0.002 Folding energies... MFEI: -27.085 AMFE: -0.635 GC content %: 42.684 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU4Hr1G053830.10 | SwissProt | 2021-04-01 | D9HP27 | 9.39e-23 |
Hvulgare_HORVU4Hr1G053830.3 | SwissProt | 2021-04-01 | D9HP27 | 1.05e-33 |
Hvulgare_HORVU4Hr1G053830.6 | SwissProt | 2021-04-01 | D9HP27 | 1.48e-32 |
Hvulgare_HORVU4Hr1G053830.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Hvulgare_HORVU4Hr1G053830.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |