Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC1BG064480 [ TRIDC1BG064480] |
1B | 640015143 | 640017378 | v1 | Triticum dicoccoides (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Tdicoccoides_TRIDC1BG064480.2 TRIDC1BG064480.2 |
Low | No | 256 | OG0022830 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -28.203 AMFE: -0.612 GC content %: 46.094 | |
Tdicoccoides_TRIDC1BG064480.3 TRIDC1BG064480.3 |
Low | No | 334 | OG0022830 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -34.132 AMFE: -0.655 GC content %: 52.096 | |
Tdicoccoides_TRIDC1BG064480.4 TRIDC1BG064480.4 |
Low | No | 355 | OG0022830 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -26.366 AMFE: -0.620 GC content %: 42.535 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Tdicoccoides_TRIDC1BG064480.2 | SwissProt | 2021-04-01 | Q1ZXH4 | 7.38e-6 |
Tdicoccoides_TRIDC1BG064480.3 | SwissProt | 2021-04-01 | Q1ZXH4 | 1.68e-7 |
Tdicoccoides_TRIDC1BG064480.4 | SwissProt | 2021-04-01 | Q1ZXH4 | 7.64e-6 |