Acoerulea Aqcoe1G486900

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Acoerulea_Aqcoe1G486900
[ Aqcoe1G486900]
Chr_01 43746170 43746614 v3.1 Aquilegia coerulea (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Acoerulea_Aqcoe1G486900.1
Aqcoe1G486900.1
Low No 302 OG0084475
Coding potential...
Type: noncoding Potential: -1.055
Folding energies...
MFEI: -23.212 AMFE: -0.615
GC content
%: 37.748


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Acoerulea_Aqcoe1G486900.1  SwissProt 2021-04-01 Q9SUM2 4.19e-8


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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