Ahalleri g26027

From GreeNC

Revision as of 15:06, 13 September 2021 by Maintenance script (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ahalleri_g26027
[ g26027]
FJVB01000166.1 162714 163561 v2.2 Arabidopsis halleri (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ahalleri_g26027.t1
g26027.t1
Low No 534 OG0015756
Coding potential...
Type: noncoding Potential: -0.666
Folding energies...
MFEI: -20.637 AMFE: -0.577
GC content
%: 35.768


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Ahalleri_g26027.t1  SwissProt 2021-04-01 F4JZL7 1.21e-9


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ahalleri_g26027.png