Ahypochondriacus AH000157

From GreeNC

Revision as of 15:10, 13 September 2021 by Maintenance script (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

[ AH000157]
Scaffold_1 1462349 1466045 v2.1 Amaranthus hypocondriacus (Phytozome 13)

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Low No 902 OG0081868
Coding potential...
Type: noncoding Potential: -0.866
Folding energies...
MFEI: -26.397 AMFE: -0.656
GC content
%: 40.244

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Ahypochondriacus_AH000157-RA  SwissProt 2021-04-01 P42552 8.95e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).