Alyrata AL1G30440

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Alyrata_AL1G30440
[ AL1G30440]
scaffold_1 7593665 7594607 v2.1 Arabidopsis lyrata (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Alyrata_AL1G30440.t1
AL1G30440.t1
Low Yes 943 OG0016924
Coding potential...
Type: noncoding Potential: -1.155
Folding energies...
MFEI: -22.195 AMFE: -0.688
GC content
%: 32.238


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Alyrata_AL1G30440.t1  Rfam 14.6 MIR159 2.2e-24


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Alyrata_AL1G30440.png