Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20797000 [ AET3Gv20797000] |
3D | 468095136 | 468101611 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET3Gv20797000.1 AET3Gv20797000.1 |
Low | Yes | 1765 | OG0025097 | Get ORF Coding potential... Type: noncoding Potential: -0.578 Folding energies... MFEI: -28.816 AMFE: -0.690 GC content %: 41.756 | |
Atauschii_AET3Gv20797000.10 AET3Gv20797000.10 |
High | No | 1279 | OG0025097 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -27.787 AMFE: -0.651 GC content %: 42.690 | |
Atauschii_AET3Gv20797000.16 AET3Gv20797000.16 |
High | No | 1221 | OG0073343 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -25.766 AMFE: -0.654 GC content %: 39.394 | |
Atauschii_AET3Gv20797000.17 AET3Gv20797000.17 |
Low | No | 826 | OG0073344 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -22.736 AMFE: -0.622 GC content %: 36.562 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET3Gv20797000.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET3Gv20797000.1 | Rfam | 14.6 | MIR1122 | 8.6e-20 |
Atauschii_AET3Gv20797000.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway |