Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20245400 [ AET5Gv20245400] |
5D | 119883316 | 119887477 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20245400.2 AET5Gv20245400.2 |
Low | No | 650 | OG0016452 | Get ORF Coding potential... Type: coding Potential: 0.050 Folding energies... MFEI: -31.077 AMFE: -0.654 GC content %: 47.538 | |
Atauschii_AET5Gv20245400.4 AET5Gv20245400.4 |
Low | No | 375 | OG0016452 | Get ORF Coding potential... Type: coding Potential: 0.197 Folding energies... MFEI: -32.213 AMFE: -0.660 GC content %: 48.800 | |
Atauschii_AET5Gv20245400.8 AET5Gv20245400.8 |
Low | No | 415 | OG0076176 | Get ORF Coding potential... Type: noncoding Potential: -0.123 Folding energies... MFEI: -27.783 AMFE: -0.607 GC content %: 45.783 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET5Gv20245400.8 | SwissProt | 2021-04-01 | Q8VXU6 | 7.9e-21 |