Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20549100 [ AET5Gv20549100] |
5D | 349981078 | 349982847 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv20549100.1 AET5Gv20549100.1 |
Low | No | 1569 | OG0016499 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -30.076 AMFE: -0.715 GC content %: 42.065 | |
Atauschii_AET5Gv20549100.2 AET5Gv20549100.2 |
Low | No | 1722 | OG0016499 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -28.751 AMFE: -0.690 GC content %: 41.696 | |
Atauschii_AET5Gv20549100.3 AET5Gv20549100.3 |
Low | No | 1555 | OG0016499 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -29.563 AMFE: -0.698 GC content %: 42.379 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET5Gv20549100.3 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
Atauschii_AET5Gv20549100.1 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
Atauschii_AET5Gv20549100.2 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron |