Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20419800 [ AET6Gv20419800] |
6D | 155657641 | 155673147 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20419800.14 AET6Gv20419800.14 |
Low | No | 1037 | OG0078677 | Get ORF Coding potential... Type: noncoding Potential: -0.318 Folding energies... MFEI: -29.277 AMFE: -0.690 GC content %: 42.430 | |
Atauschii_AET6Gv20419800.16 AET6Gv20419800.16 |
Low | No | 404 | OG0025899 | Get ORF Coding potential... Type: noncoding Potential: -0.713 Folding energies... MFEI: -24.579 AMFE: -0.613 GC content %: 40.099 | |
Atauschii_AET6Gv20419800.4 AET6Gv20419800.4 |
High | No | 667 | OG0010135 | Get ORF Coding potential... Type: noncoding Potential: -0.306 Folding energies... MFEI: -28.486 AMFE: -0.669 GC content %: 42.579 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET6Gv20419800.14 | SwissProt | 2021-04-01 | Q8BX70 | 4.24e-5 |
Atauschii_AET6Gv20419800.16 | SwissProt | 2021-04-01 | Q54KX3 | 1.08e-6 |