Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Athaliana_AT3G27340 AT3G27340 |
Chr3 | 10121234 | 10123128 | v11 | Arabidopsis thaliana (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Athaliana_AT3G27340.2 AT3G27340.2 |
High | No | 690 | OG0024056 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -26.652 AMFE: -0.679 GC content %: 39.275 | |
Athaliana_AT3G27340.4 AT3G27340.4 |
Low | No | 1051 | OG0024056 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -25.300 AMFE: -0.677 GC content %: 37.393 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT3G27340.4 | RepBase (RepeatMasker) | 2014-01-31 | SINE |