Bstricta Bostr.7128s0412

From GreeNC

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Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

[ Bostr.7128s0412]
Scaffold7128 1844974 1846147 v1.2 Boechera stricta (Phytozome 13)

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Low Yes 1081 OG0016924
Coding potential...
Type: noncoding Potential: -1.032
Folding energies...
MFEI: -23.608 AMFE: -0.690
GC content
%: 34.228

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Bstricta_Bostr.7128s0412.1  Rfam 14.6 MIR159 8.5e-25

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).