Bvulgaris BVRB 002470
From GreeNC
Revision as of 20:27, 13 September 2021 by Maintenance script (Talk | contribs)
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Bvulgaris_BVRB_002470 [ BVRB_002470] |
0075.scaffold00261 | 103027 | 118891 | v1.2 | Beta vulgaris (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Bvulgaris_KMS96046 KMS96046 |
High | No | 463 | OG0027792 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -25.076 AMFE: -0.628 GC content %: 39.957 | |
| Bvulgaris_KMS96047 KMS96047 |
High | No | 509 | OG0027792 | Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -23.301 AMFE: -0.590 GC content %: 39.489 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
