Ccanephora GSCOC T00033084001

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ccanephora_GSCOC_T00033084001
[ GSCOC_T00033084001]
1 8310906 8314135 v1 Coffea canephora (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ccanephora_CDP11073
CDP11073
High No 1078 OG0142045
Coding potential...
Type: noncoding Potential: -1.213
Folding energies...
MFEI: -26.289 AMFE: -0.651
GC content
%: 40.353


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ccanephora_GSCOC_T00033084001.png