Clanatus Cla97C01G000760

From GreeNC

Revision as of 22:10, 13 September 2021 by Maintenance script (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Clanatus_Cla97C01G000760
[ Cla97C01G000760]
1 510638 511719 v1 Citrullus lanatus (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Clanatus_Cla97C01G000760.1
Cla97C01G000760.1
High No 228 OG0138777
Coding potential...
Type: noncoding Potential: -1.010
Folding energies...
MFEI: -34.430 AMFE: -0.649
GC content
%: 53.070


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Clanatus_Cla97C01G000760.png