GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gmax_Glyma.01G016000 [ Glyma.01G016000]	Gm01	1548896	1549797	A4v1	Glycine max (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gmax_Glyma.01G016000.1 Glyma.01G016000.1	High	No	222	OG0165001		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -21.126 AMFE: -0.586 GC content %: 36.036
Gmax_Glyma.01G016000.2 Glyma.01G016000.2	High	No	336	OG0165002		Get ORF Coding potential... Type: noncoding Potential: -0.656 Folding energies... MFEI: -21.458 AMFE: -0.596 GC content %: 36.012

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).