Gmax Glyma.01G034500

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Gmax_Glyma.01G034500
[ Glyma.01G034500]
Gm01 3585691 3588367 A4v1 Glycine max (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Gmax_Glyma.01G034500.1
Glyma.01G034500.1
High No 818 OG0165016
Coding potential...
Type: noncoding Potential: -0.757
Folding energies...
MFEI: -24.364 AMFE: -0.680
GC content
%: 35.819
Gmax_Glyma.01G034500.2
Glyma.01G034500.2
Low No 925 OG0165017
Coding potential...
Type: noncoding Potential: -0.819
Folding energies...
MFEI: -25.903 AMFE: -0.709
GC content
%: 36.541


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Gmax_Glyma.01G034500.2  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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