Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gmustelinum_Gomus.D05G155600 [ Gomus.D05G155600] |
D05 | 12792394 | 12795533 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gmustelinum_Gomus.D05G155600.1 Gomus.D05G155600.1 |
Low | No | 1154 | OG0019339 | Get ORF Coding potential... Type: noncoding Potential: -0.685 Folding energies... MFEI: -24.601 AMFE: -0.676 GC content %: 36.395 | |
Gmustelinum_Gomus.D05G155600.2 Gomus.D05G155600.2 |
Low | No | 1062 | OG0019339 | Get ORF Coding potential... Type: noncoding Potential: -0.647 Folding energies... MFEI: -24.680 AMFE: -0.681 GC content %: 36.252 | |
Gmustelinum_Gomus.D05G155600.3 Gomus.D05G155600.3 |
Low | No | 1087 | OG0019339 | Get ORF Coding potential... Type: noncoding Potential: -0.584 Folding energies... MFEI: -24.719 AMFE: -0.682 GC content %: 36.247 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmustelinum_Gomus.D05G155600.2 | SwissProt | 2021-04-01 | Q6ZI44 | 1.43e-9 |
Gmustelinum_Gomus.D05G155600.3 | SwissProt | 2021-04-01 | Q6ZI44 | 1.77e-9 |
Gmustelinum_Gomus.D05G155600.1 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
Gmustelinum_Gomus.D05G155600.2 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
Gmustelinum_Gomus.D05G155600.3 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
Gmustelinum_Gomus.D05G155600.1 | SwissProt | 2021-04-01 | Q6ZI44 | 2.31e-9 |