Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gmustelinum_Gomus.D11G236300 [ Gomus.D11G236300] |
D11 | 31097004 | 31099291 | v1.1 | Gossypium mustelinum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gmustelinum_Gomus.D11G236300.1 Gomus.D11G236300.1 |
High | No | 943 | OG0011763 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -21.421 AMFE: -0.627 GC content %: 34.146 | |
Gmustelinum_Gomus.D11G236300.2 Gomus.D11G236300.2 |
High | No | 1752 | OG0011868 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -21.507 AMFE: -0.668 GC content %: 32.192 | |
Gmustelinum_Gomus.D11G236300.3 Gomus.D11G236300.3 |
Low | Yes | 1302 | OG0011868 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -23.848 AMFE: -0.690 GC content %: 34.562 | |
Gmustelinum_Gomus.D11G236300.4 Gomus.D11G236300.4 |
High | No | 1414 | OG0011868 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -24.257 AMFE: -0.703 GC content %: 34.512 | |
Gmustelinum_Gomus.D11G236300.5 Gomus.D11G236300.5 |
Low | Yes | 942 | OG0011868 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -24.246 AMFE: -0.701 GC content %: 34.607 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gmustelinum_Gomus.D11G236300.3 | Rfam | 14.6 | mir-891 | 0.0092 |
Gmustelinum_Gomus.D11G236300.5 | Rfam | 14.6 | mir-891 | 0.0067 |