Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G103800 [ HORVU2Hr1G103800] |
chr2H | 700872726 | 700945483 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G103800.1 HORVU2Hr1G103800.1 |
Low | No | 608 | OG0002126 | Get ORF Coding potential... Type: noncoding Potential: -0.598 Folding energies... MFEI: -32.714 AMFE: -0.688 GC content %: 47.533 | |
Hvulgare_HORVU2Hr1G103800.2 HORVU2Hr1G103800.2 |
Low | No | 632 | OG0002126 | Get ORF Coding potential... Type: noncoding Potential: -0.230 Folding energies... MFEI: -32.832 AMFE: -0.678 GC content %: 48.418 | |
Hvulgare_HORVU2Hr1G103800.3 HORVU2Hr1G103800.3 |
Low | No | 673 | OG0002126 | Get ORF Coding potential... Type: noncoding Potential: -0.248 Folding energies... MFEI: -34.606 AMFE: -0.667 GC content %: 51.857 | |
Hvulgare_HORVU2Hr1G103800.4 HORVU2Hr1G103800.4 |
Low | No | 579 | OG0002126 | Get ORF Coding potential... Type: noncoding Potential: -0.696 Folding energies... MFEI: -28.877 AMFE: -0.663 GC content %: 43.523 | |
Hvulgare_HORVU2Hr1G103800.5 HORVU2Hr1G103800.5 |
Low | No | 491 | OG0002126 | Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -30.509 AMFE: -0.690 GC content %: 44.196 | |
Hvulgare_HORVU2Hr1G103800.6 HORVU2Hr1G103800.6 |
High | No | 372 | OG0039749 | Get ORF Coding potential... Type: noncoding Potential: -0.361 Folding energies... MFEI: -31.425 AMFE: -0.582 GC content %: 54.032 | |
Hvulgare_HORVU2Hr1G103800.7 HORVU2Hr1G103800.7 |
High | No | 257 | OG0039750 | Get ORF Coding potential... Type: noncoding Potential: -0.548 Folding energies... MFEI: -37.082 AMFE: -0.648 GC content %: 57.198 | |
Hvulgare_HORVU2Hr1G103800.8 HORVU2Hr1G103800.8 |
High | No | 350 | OG0039751 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -34.971 AMFE: -0.534 GC content %: 65.429 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU2Hr1G103800.1 | SwissProt | 2021-04-01 | Q14657 | 9.87e-6 |
Hvulgare_HORVU2Hr1G103800.2 | SwissProt | 2021-04-01 | Q14657 | 1.97e-5 |
Hvulgare_HORVU2Hr1G103800.3 | SwissProt | 2021-04-01 | Q14657 | 1.62e-5 |
Hvulgare_HORVU2Hr1G103800.4 | SwissProt | 2021-04-01 | Q14657 | 1.16e-5 |
Hvulgare_HORVU2Hr1G103800.5 | SwissProt | 2021-04-01 | Q14657 | 4.64e-6 |