Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU3Hr1G064410 [ HORVU3Hr1G064410] |
chr3H | 491428834 | 491434720 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU3Hr1G064410.51 HORVU3Hr1G064410.51 |
Low | No | 1334 | OG0041422 | Get ORF Coding potential... Type: noncoding Potential: -1.350 Folding energies... MFEI: -28.246 AMFE: -0.690 GC content %: 40.930 | |
Hvulgare_HORVU3Hr1G064410.6 HORVU3Hr1G064410.6 |
Low | No | 1361 | OG0041423 | Get ORF Coding potential... Type: noncoding Potential: -0.249 Folding energies... MFEI: -27.458 AMFE: -0.688 GC content %: 39.897 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU3Hr1G064410.51 | SwissProt | 2021-04-01 | Q5Z8Y4 | 2.42e-6 |
Hvulgare_HORVU3Hr1G064410.6 | SwissProt | 2021-04-01 | A2YGP6 | 2.15e-15 |