Jregia Jr01 03210
From GreeNC
Revision as of 08:11, 14 September 2021 by Maintenance script (Talk | contribs)
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Jregia_Jr01_03210 [ Jr01_03210] |
1 | 2293993 | 2298250 | v2 | Juglans regia (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Jregia_Jr01_03210_p1 Jr01_03210_p1 |
Low | No | 659 | OG0050449 | Get ORF Coding potential... Type: noncoding Potential: -0.488 Folding energies... MFEI: -26.829 AMFE: -0.618 GC content %: 43.399 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Jregia_Jr01_03210_p1 | SwissProt | 2021-04-01 | Q96A57 | 1.3e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
