Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Jregia_Jr_Scaffold_651_00010 [ Jr_Scaffold_651_00010] |
LIHL02000661.1 | 35100 | 35459 | v2 | Juglans regia (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Jregia_Jr_Scaffold_651_00010_p1 Jr_Scaffold_651_00010_p1 |
Low | No | 360 | OG0193928 | Get ORF Coding potential... Type: noncoding Potential: -0.391 Folding energies... MFEI: -22.139 AMFE: -0.569 GC content %: 38.889 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Jregia_Jr_Scaffold_651_00010_p1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Jregia_Jr_Scaffold_651_00010_p1 | SwissProt | 2021-04-01 | P0C2F6 | 3.61e-5 |