GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Macuminata_Ma00_g00280 [ Ma00_g00280]	CAJGYN010000024.1	842152	850459	v2	Musa acuminata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Macuminata_Ma00_t00280.1 Ma00_t00280.1	High	No	720	OG0019888		Get ORF Coding potential... Type: noncoding Potential: -0.466 Folding energies... MFEI: -25.875 AMFE: -0.580 GC content %: 44.583
Macuminata_Ma00_t00280.2 Ma00_t00280.2	High	No	1197	OG0019888		Get ORF Coding potential... Type: noncoding Potential: -0.549 Folding energies... MFEI: -30.794 AMFE: -0.636 GC content %: 48.454
Macuminata_Ma00_t00280.3 Ma00_t00280.3	High	No	1203	OG0019888		Get ORF Coding potential... Type: noncoding Potential: -0.536 Folding energies... MFEI: -30.756 AMFE: -0.634 GC content %: 48.545

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).