Obrachyantha OB0037G10110

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Obrachyantha_OB0037G10110
[ OB0037G10110]
super0037 174401 176372 v1.4b Oryza brachyantha (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Obrachyantha_OB0037G10110.1
OB0037G10110.1
Low No 330 OG0242967
Coding potential...
Type: noncoding Potential: -0.336
Folding energies...
MFEI: -27.455 AMFE: -0.546
GC content
%: 50.303


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Obrachyantha_OB0037G10110.1  RepBase (RepeatMasker) 2014-01-31 DNA/CMC-EnSpm


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Obrachyantha_OB0037G10110.png