Olongistaminata AMDW01011388.1 FG001

From GreeNC

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Olongistaminata_AMDW01011388.1_FG001
[ AMDW01011388.1_FG001]
AMDW01011388.1 1 228 v1 Oryza longistaminata (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Olongistaminata_AMDW01011388.1_FGT001
AMDW01011388.1_FGT001
Low No 228 OG0253108
Coding potential...
Type: noncoding Potential: -0.144
Folding energies...
MFEI: -46.623 AMFE: -0.629
GC content
%: 74.123


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Olongistaminata_AMDW01011388.1_FGT001  SwissProt 2021-04-01 O26373 4.3e-11


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Olongistaminata_AMDW01011388.1_FG001.png